Scaffold Ga0074242_10349496

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_10349496
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11853
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (20.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_1034949615	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDEKLKALKKDDAVTVIHDGKSYKVAFDMLTANEIPEKVQTPTEGANVQQAANVPPKSNGKLTHDEITEKAMLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF*
Ga0074242_1034949616	F014956	N/A	MINIQEFALNVSLTICPNHIVEPLHLKKWWRQRGVGEIEKYFWTGKKINYDQEIDWKAISDHKKQMWYDSQNFQINMGHEYSKRQG*
Ga0074242_1034949617	F041648	N/A	MEALKTTLTDNALTRYYEERIVYLEGENERLRNEARADFLTVLDFWIYAQRIIEAYVIFHKESNHDHYLDMIKTILQNMESKEEKALDTGINKLRIEIIARCKIAIIKCQQITAAR*
Ga0074242_1034949618	F021732	N/A	MNITKYTCKCTLDKKLGHFVHVIFSHGFGLYGQTSPHSPEDNMEIHGWTFEPHDIDLELYPQITSRNLMPLVADNEMDWTILTNQSL*