NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070661_100322968

Scaffold Ga0070661_100322968


Overview

Basic Information
Taxon OID3300005344 Open in IMG/M
Scaffold IDGa0070661_100322968 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F020321Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0070661_1003229681F000926N/AVDVQKLEVLVRTAIFKPATALVGFLLQAAAERVDVTYQPKPGEQRKGRQPVTVDCIFGSFTLERDYYYHPGKAIGHYPADAALGIEAGKTPALLRLVCLEGADEASYQKAEEHLRETGG
Ga0070661_1003229682F020321N/AMNHSNSLPPVLQQIAQIQSMERGKLSVIKESASGPFYKLQAREKGKNVTRYVPREQVPAVQQALNGYKQFQALTAQYADEVISQTRAAIAAGSKKKPSRPRSSGPKNKKSTNS*

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