Scaffold Ga0070691_10583923

Overview

Basic Information

• Taxon OID: 3300005341
• Scaffold ID: Ga0070691_10583923
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 657
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002563	Metagenome	547	Y
F048408	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070691_105839231	F002563	N/A	LADSTGEWEVVGRPYATAGGKNTHVRVQRVDKPGVTETRLWGSYEWVTVIRRATAEEGKR
Ga0070691_105839232	F048408	AGGAGG	MRVRRASATVALCLLASAMTACAQCGWVLWEISSPTPKQPDWTYTKVDAEATNEACKQRAEVAIQRRTLQARPYGWTVTRGGANRVNFIKVGDPDSFFVDFQCWPDTVDPREAKGK*