NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070660_100063829

Scaffold Ga0070660_100063829


Overview

Basic Information
Taxon OID3300005339 Open in IMG/M
Scaffold IDGa0070660_100063829 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2863
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018740Metagenome / Metatranscriptome233Y
F036725Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0070660_1000638292F036725GGAMFGFGRSSKDPLSDVRSATRWLSTLPGGDSLAVHTDVIAELERVTGPMTTRTANRLRAVFHVDAQTGAQRRALVAQYTEHASRSSRIENQLWTALFSLTQSFLATYQSFANELVERPQSGRWQELMPELLCRQIVHLALDARVRLFRYEQWIPAKWAELHGLMTLACSRQFERQLVTLAESTTTTIEHEYLRALVLQLMSAGSLTARQVEFIWGELDDWCAPLRLTLEASSANCFVVDLAGRDGLRRRKAGPLESRVLFLDTRPLHAVMMQHVVTLEQKIRAEPLSGRTPRRSEQLTLFTKLAAQVDPEFKPFARRGERIATSGNVDAIVGFQKIASYFREEARQPIDVVDSTGESFDSTMDIAVFGRIRDEPTRRREIARRRIGAHAAPGGPWEAKDVSQTGFKLVAPIQVANAVTLGTLVAIHPHGQPRWTLGIIRRMKRTSADRAEIGLAIVADTIAAVDVNEQRKRTAEDYSIDGEGSTINGRRFGALLLSLRPRDGEPMVQSLIVPGVEYEAAKRYQVSTAKAEYRIRFGRLIEQQPDWVWTAIEPLDGGTRASTAHAVNGPTTIGGVATTRDRAR*
Ga0070660_1000638293F018740AGGMLGKKNMGILIEAPSRRQDQSGAPANAPAVAMDEQAGALHIREVVRITGLRREQLYMWQRRYGFPSPMRD
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