Scaffold Ga0068868_100341563

Overview

Basic Information

• Taxon OID: 3300005338
• Scaffold ID: Ga0068868_100341563
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005150	Metagenome	410	Y
F048377	Metagenome	148	Y
F051227	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068868_1003415631	F048377	N/A	EWVMHEEIPEVEETLRVERVAKRLVTEVQVYLALVLDPVV*
Ga0068868_1003415632	F005150	AGG	MKTARYRKRCFDQIEGTMMTNKELTAEVDRLRRQLETADQERTDQETQNQNLVGQLENKEREKISKCSPYHSKCRTCVILFLTAIAVMQV*
Ga0068868_1003415633	F051227	N/A	LKVNAKRHLEAVIKERDDWKAQCLKATEERDAWNKRCQEMATGIVPVLDLIDPALTEEELRTPQLGLVERCKQAWGWFQDFVKEAGEYTGAHVLSMVRAHYPLINLERLEAGYPKEIDPNKAEELRTAQLELSSKIIGDISLCGGGTSPVQGMPSTSQLEMPSAASQPTKPAVSTSQAPAGPSPSA*