Basic Information | |
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Taxon OID | 3300005337 Open in IMG/M |
Scaffold ID | Ga0070682_100000070 Open in IMG/M |
Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 94838 |
Total Scaffold Genes | 72 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (61.11%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002416 | Metagenome | 561 | Y |
F009773 | Metagenome | 313 | Y |
F013685 | Metagenome | 269 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070682_10000007047 | F013685 | AGGA | MKFIKHFLIGVVLGAMLAPSTTHAQWTVFDPAQYSLQIERQIEEANRWLERVRQYSEEINKLAEQLSTMKGVLGQAEKLVLHNANLTRTMAQIGQTVRDVFALKRAIEAMVITRLRMIRSIKTRLMNGIFDPEADLNDFEDYLRNSIGRTSQNKIATMNRIAMFDGTLARLYHDLQTAQARQAGAAIQLKQARDKLDAELAKPQTEQCASCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVKATDEAWDKLNIVKNDIFAAIERGGMPPPPRRP* |
Ga0070682_10000007049 | F009773 | GAGG | MRARPVRRNIYLPVVRFGVADSDWFTILIISCAGYLAPVPFGITILYVPLQMWTWLLATAGSIAFFNYIRIGRKPYWLQHKLKSIFLHHRQYRAIPNGKKRSLTRSWIVQTEAKPTSLEFDEQIERASPTMILLDRNWSFQEARDERWNPNLLLMN* |
Ga0070682_10000007050 | F002416 | AGGAG | MKSLIEITMYPGLEYSRFAHVGRKLLAIGLGVKATQAVLATVIVFTLGLASASAQTPSGSFFNGDSAQLGNSLRSITFFLAAVMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGICAAVYAFSQGEAVPLDNQF* |
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