Scaffold Ga0070682_100000046

Overview

Basic Information

• Taxon OID: 3300005337
• Scaffold ID: Ga0070682_100000046
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130568
• Total Scaffold Genes: 126
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (48.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002818	Metagenome	528	Y
F006775	Metagenome	365	Y
F034879	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070682_100000046121	F034879	N/A	MAIFINIALGVLPLLILGASIAAGIDDDRRHRTMFLLVYGLWALTLAMLNWMRSWPPAWIAVWAVAGVVSLGMAWGRRNRR*
Ga0070682_10000004621	F002818	N/A	MPSEVEVLRELAKLYWSGKPIPCPRHPGGIMTGSFVQTTFADHIFLACDRGKETITIPQRPKQKEFQAQQVEGYVENLQRGDSILCYRCQSPLEVARPEDPNSGITEFTFTCIRCFSYGSWTGKPELAKIGV*
Ga0070682_10000004694	F006775	AGGAGG	MQLPKDACACGHPLDQHDGGRGAPCNYCGCAAGESPTAFQVGVIHSMHEMTVMLARLVKEIQGKSGG*