Scaffold Ga0070682_100000002

Overview

Basic Information

• Taxon OID: 3300005337
• Scaffold ID: Ga0070682_100000002
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 506802
• Total Scaffold Genes: 445
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 255 (57.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039817	Metagenome	163	Y
F041799	Metagenome	159	Y
F061939	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070682_100000002235	F039817	N/A	MPDDSLRNLPERTGKHRCIRCLAETQAEEYMRNDHLCDACAADGDYPLASTPEPKKNGK*
Ga0070682_100000002268	F041799	GGAGG	MPAAIDETTVTVKGSPVRSLQRFIDNDLSQEQRETVFRGLPPEYATRFRSPILATETIPVHMLNRLTEEAAKSKGEAVESFARRAGREAAADAIKGIYRFFALVMTPQALLSKASQMWSSLYNRGELKIDQQTDKGARIRLINFPSELAGCARITGWIERMAELTGAKNVMVNQTGCFVKGAPHCEWTVKWS*
Ga0070682_10000000280	F061939	AGGAG	MIRSRGILIAALFALFATGCFEVEQSIELKKDLSGTANFKLGVDMEPMVMIMAKVQKEMGGDKSPLTAAEIAAAKADFKKNEKKSTTTTEDPRKEAEGGLPPGVKLLDVSVKEKEFGVTTNMKFAFDKLSSLVGVKLGKKKEEGEGPADPMKKSVLDTPFEGLEISETASTISIHTKPQNPAEKVKSQASEQAPKLDPETEKMMNDAFKNMRVAWKITAPFDVVSSNATRKEGNTLIWEYDFEKLQKLAASKKGLDDMGVRVTYKK*