Scaffold Ga0070680_100093761

Overview

Basic Information

• Taxon OID: 3300005336
• Scaffold ID: Ga0070680_100093761
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046702	Metagenome / Metatranscriptome	151	Y
F064608	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070680_1000937612	F064608	GAG	VTVLASLAGTYEGSGEWFDSSGKSSTYSVRQTNAATPDGFEIAFKHDFADGTVVDARFQMTWVAPHIFRVSVAGASLGYGYLLDGYCHYHLETGQAFVEAGYRVNGDTIDVFGSSTKNAEGHYIAWKEVLRRTA*
Ga0070680_1000937613	F046702	AGTAG	MTAQDAQSATTPGIVRFAVWLTFFNTWVLFEETVVDRYGLWEYMPYYRVGRLCSWDIGAMVLLGFIVWRVFRRR*