Scaffold Ga0070680_100002882

Overview

Basic Information

• Taxon OID: 3300005336
• Scaffold ID: Ga0070680_100002882
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12787
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005908	Metagenome / Metatranscriptome	386	Y
F030723	Metagenome / Metatranscriptome	184	Y
F057269	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070680_10000288212	F005908	GAG	MLKPILSLAAVGFVGVVLWKLAAGLLLPLFFFVFKIALIGGLIALAFWFFNKKSRGKEDTPPATS*
Ga0070680_10000288214	F057269	N/A	WLVNTRTGGVMWRRSSQSTEKVGGMSFIGGMPSFEAHDPNDAYGRLINQLVYNVTYDVRSTWVDQ*
Ga0070680_1000028823	F030723	AGTAG	MKTVPDQTGDFLARRLDAARDLYLLALGLGERGPHQFGSLIIEARLHFISVIEEARTAGLDTIDIQNLLANHNIDLLDTIRPELRERLEGLLREVANPR*