Scaffold Ga0070680_100000022

Overview

Basic Information

• Taxon OID: 3300005336
• Scaffold ID: Ga0070680_100000022
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81256
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023370	Metagenome / Metatranscriptome	210	Y
F030366	Metagenome / Metatranscriptome	185	Y
F060672	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070680_10000002249	F030366	AGGAGG	MPAETMISVLAATLLATGWALWVLPVGQCRECPHCRAEQLARERTEEARTGRYYGIPLCPACGRHHQPEEGHRT*
Ga0070680_10000002252	F023370	GGAG	MRTPTTAEAGARSLVWHLESGGWTEREASNLVALLHGLRPATAGWTVREIDHLRFLQAMVQRGRISR*
Ga0070680_10000002257	F060672	AGGAGG	MTTDTSATRSSTTRSRATNGGDPSGPAAAVNVAVREMRNAIDGVGRSMPEVARVSRSAVDELVRAVETGSDQQITAGVSLSLGLAMGMLLGGAPRFLILLALAPVAVIGLAMTDRRTARSRGTAAT*