Scaffold Ga0066388_101175289

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_101175289
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1308
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001070	Metagenome / Metatranscriptome	787	Y
F002788	Metagenome / Metatranscriptome	530	Y
F004510	Metagenome / Metatranscriptome	435	Y
F006474	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1011752891	F002788	N/A	LAYGQPPSDYQVPFSSNEACEAARLQLIKDGERIGQAMIDRASAQDRQIGGNNKTALLMAAISNAPYVSAVCVQTSAS*
Ga0066388_1011752892	F006474	GGAGG	MRGAENNEPEMSFQLGYQQGAIEVFCAVERFLDPATREVLQAWIEKDVFMWRAKAMLSHPPNWRLNMIAGPRSEGRPLDRLDLRYAPAVTRT*
Ga0066388_1011752893	F001070	GGAGG	MSSLDKMLGWFPHTATEWIEFIIVAVLLWLLMVVAISELELSSVS*
Ga0066388_1011752894	F004510	GGAGG	MITWALIASAVIALVLVVLVQGDWTSRDSWFAAVFASAVMAMVIDHYVNQITPG*