Scaffold Ga0066388_100938396

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100938396
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011443	Metagenome / Metatranscriptome	291	Y
F028287	Metagenome / Metatranscriptome	192	Y
F047243	Metagenome / Metatranscriptome	150	Y
F059051	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1009383961	F028287	AGGAG	MTRKSPVVLGVAVLLSWSIAIPSNTWADPQAAGQRAGEVARVIPAVNIARGAKTIPAAAKTAVNWQDLVNTQANARARIAL
Ga0066388_1009383962	F011443	GAG	MRALAAILVAAAVVYAIFHYYFQKMPTTDEGTAPTQAISLSGVRMDLLQVA*
Ga0066388_1009383963	F059051	N/A	VPGTGRDGYTYSVECSPGAEFKVSARHEPAPAGSPIRYPNLAVDGEMQVSEIN*
Ga0066388_1009383964	F047243	AGGA	MSTVHFRRVERRRTGRVSVFADLTVQGISEQNKKFKIHTRSLSVSGHGGLTVLDVSVSVGQTLLLVNDNSGEKAECKVVSIRPSNNGKTIVAFEFIATQANFWKMSFPLAGAKPLRRSLPSSATA*