Scaffold Ga0066388_100744849

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066388_100744849

Scaffold Ga0066388_100744849

Overview

Basic Information
Taxon OID	3300005332 Open in IMG/M
Scaffold ID	Ga0066388_100744849 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1580
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005856	Metagenome / Metatranscriptome	388	Y
F006356	Metagenome / Metatranscriptome	375	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1007448491	F005856	GGA	MKWNATLAAFAVSAFLAGLSTAIPEQSNSTAPVLLNAPWGQAPVPVIKPMQENRSSRQIRSAPAPTDVGQDSPQQQSRPIDRPPLMGVEHVPSGGAQQVRRRAVYREPARRINIAGGVLVLPVVVYYGVPVILNVPELGYVDVPEDEYARLYDKLSSSDAELVQEAMSSLRKLKELEEAEVEAAQRGPERTEPTNRGDLSEPIFFDAPSRTETRRRGLY*
Ga0066388_1007448492	F006356	GGAGG	MQRRALALAAIATMLCCGSVTRAQVGTVFYPAEFAACQPLPPWYPRGWELMVRYPCVTYAYGPAYHPPAYYPYPAAYPYQRVSIHAARRVHRRPYLRPGWWW*

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