Scaffold Ga0066388_100728179

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066388_100728179

Scaffold Ga0066388_100728179

Overview

Basic Information
Taxon OID	3300005332 Open in IMG/M
Scaffold ID	Ga0066388_100728179 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1595
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006774	Metagenome / Metatranscriptome	365	Y
F013323	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1007281791	F006774	GGTGG	MTEQQTGKCPQCSQPISPEDTIVYGFGVLGHLDCRRPRVLSAEERTLLLMYCRDHPVAECAHCAVWFYLREVASIDQFDIRSHGCRWCYRDLTDSIRTHLYGCAMLPTNVRRRAVAAREAARSLVKRSLELRDAADVAIREVEASVHALRQTMRQSTWRSRRGSGTIPFRRVSS*
Ga0066388_1007281792	F013323	GAGG	MQVMCSKCSQPIALTDNIESSDGRLSHADCERPQVLTPEERALVFIYCGNHVVAYCLSCSEKYRFTELAADLFGSGRMFGSGRTNMCPRCRRDLTEDVRAHVFRCMTLPAEVRFRAQAVREAAQRLVKQAQQASDRADALIREAEALLSEQQRALRAVVARRTTT*

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