NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_100411785

Scaffold Ga0066388_100411785


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_100411785 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1996
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F012379Metagenome / Metatranscriptome281Y
F015802Metagenome / Metatranscriptome252Y
F025566Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0066388_1004117852F025566GAGGMSCQNPHVAPYTWTVREGSIDGAVVMREYVYDVPDKEPAEGQELYLSNGSGPWRVLLLEKVPEVHRSPYNILVVERVH*
Ga0066388_1004117853F015802N/AVESGSNAELEAARRELHELYRRFAATRPFSWSRMNDQMQIARLKRRIAKLERDAATQ*
Ga0066388_1004117854F012379N/AMVTAAARPHIFWVGDDQKRVRGWPIGPALLATLGDINDDVQEALTAERARLARQGYAADLPLPALWWTPPRRATDATHLAAVPA*
Ga0066388_1004117855F005548N/AVFRWFLSLFGRGQRDEASPIRESEAYARSYGERSGEIVSVARQEPKPIPRRTGDMTGELLRRAFEVKLDSRGRARS*
Ga0066388_1004117856F007088AGGMQAPADAAKIERRPMQLFLRDPSYTDRLAAFLTSVGRQAVVCAPDRVDIDETADDSQHLELELYLRVWRVLYPDADVELALS*
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