Scaffold Ga0066388_100170238

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100170238
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2777
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012142	Metagenome / Metatranscriptome	283	Y
F028591	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1001702385	F012142	N/A	MRKFLRKWGSWFSSRWLGVAHPDEALFPRFVLLVRNSGGKFGKVVKEKFVMLFPRFVLLAQNVARDRKNDNEAKLGPKIAWPYVMNSSLAMRGPIASGTWIWHRQHAHWHHGYYRTRR*
Ga0066388_1001702387	F028591	N/A	TNLYAGPSEKRFEGEWASHKDVDFGIHLHQDGNQLTGYHSAVTKDGSRTDTAPDGEGPPSITGSIKGDTAIVDVHSAYSDAVLKVRLTLHDRSLNWKVLQVKQSGEHYIPDQATLSKEH*