Scaffold Ga0066388_100141850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066388_100141850

Scaffold Ga0066388_100141850

Overview

Basic Information
Taxon OID	3300005332 Open in IMG/M
Scaffold ID	Ga0066388_100141850 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2968
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002947	Metagenome / Metatranscriptome	518	Y
F052028	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1001418502	F002947	GGAG	MGNSAAPHHVVLMGAVVILSTIASLPTFAEFEKPSWNVQELFKQCNYKGSLDKIFCLEFVSGIARQVFTNGLGSKHSNVPPDLATMSIPSACPKSLVSNDAMVEAFNEWANEHLEKWPTNARTGVMQAMSDTWPCP*
Ga0066388_1001418505	F052028	N/A	LLIAAVPVHAQAQTLSTLNVTKGDVQKVVKIITSDKAKVQTYCEINKVSDEMNRVYRKNDKKRLDELSQKIERLEKLLGPEYVALMDGLQKLAPENSKRASEILLQFEVLDRLCTK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.