Basic Information | |
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Taxon OID | 3300005332 Open in IMG/M |
Scaffold ID | Ga0066388_100101826 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3338 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005101 | Metagenome / Metatranscriptome | 412 | Y |
F007168 | Metagenome / Metatranscriptome | 356 | Y |
F015010 | Metagenome / Metatranscriptome | 258 | Y |
F029059 | Metagenome / Metatranscriptome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066388_1001018263 | F015010 | N/A | METATEYRRFAQECRRLARAAKTERHRKIMEDMARAWDTLATEADKEASHAPP* |
Ga0066388_1001018264 | F029059 | AGG | MGRSDEYRRYAAECLEMASVFHEPKARAALLQMAQVGLRLASQRTLHNAEEKADQGGA* |
Ga0066388_1001018265 | F005101 | GAG | MKDELTTILEALRAAQGELADYLVSADRNAELTIAKLVGILDRRDVVRAMRVLRALESAGGAPQRTLAEVS* |
Ga0066388_1001018266 | F007168 | GGCGG | MREKIGYCRQQAAECAARAQEAADKDTRELFLKFRNSWLNAAKRYESSTAVTPDESPERRPPSFAPELSARDWRERPNDARTDTTAERLGAA* |
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