Scaffold Ga0066388_100081035

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100081035
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3618
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000150	Metagenome / Metatranscriptome	1910	Y
F003338	Metagenome / Metatranscriptome	493	Y
F012020	Metagenome / Metatranscriptome	284	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1000810353	F012020	N/A	MIRSHLAQANRYIAELRADIARERVIIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE*
Ga0066388_1000810354	F003338	N/A	MPTRRHYRRPNPDRRRALELLAGSRYGYTKAILRAHGFSIDMLVELVKAGLATTKRERMVAGGRQTDVVRVRITEAGRQALAKMSK*
Ga0066388_1000810355	F000150	GGAG	MSITPYLDDLDDDPEAKRVLGVALEKTRVSLGLTDGFADGIIATRIVELAKAGERNPDLLCEGAIEQLRGHLYGD*