Scaffold Ga0066388_100032117

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100032117
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4965
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003243	Metagenome / Metatranscriptome	498	Y
F020965	Metagenome / Metatranscriptome	221	Y
F084588	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1000321173	F084588	GGAG	MNWLLIVAILVICASPLYAWAQQPNTAKLKADAQKVVRIISGDKAKTQTYCQIAELSEQIDQEKDRNKAEALSQKINGLEKQLGPEYLAFVESTQDLDPNSKDGRDVVSMFDELDASCR*
Ga0066388_1000321174	F020965	GAGG	MKSPLVIVLVAVVLVAVGTLAAMNKACKSSQHAWCAPMATVRHHIKTG*
Ga0066388_1000321175	F003243	GGA	MLVPLFGYFFCMITMLTAVVVLLSSFSNISTVGIGRHHLRPPVIGRTVMVEIQRHSPVAKEETPAKDASPVVATAKADAKKIKHYKPRVLASQRNNDGYGGALGYVEESRSGPRGPFFQ*