Scaffold Ga0066388_100013541

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100013541
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6611
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023692	Metagenome / Metatranscriptome	209	Y
F025358	Metagenome / Metatranscriptome	202	Y
F087707	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1000135414	F087707	AGAAGG	MRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0066388_1000135416	F023692	AGGAG	MRILLGIAIVVVFVFTAWSVEPTVGKTPSNVSLDPHGMMLNTTNLPQAHYDDFSTIF*
Ga0066388_1000135418	F025358	GGAG	MRGVAVLVFYVLGLGAIISFGIAGLMAIQSPTKQTSSAPVAAVAPQKERAAKPVRQTTQKDAQSNQKRKSVNATRKRMEEAPTIPSSGLDAYGSADEPRRQLNPFRFFGR*