NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_100005422

Scaffold Ga0066388_100005422


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_100005422 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8891
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F048187Metagenome148Y
F065162Metagenome / Metatranscriptome128Y
F096138Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0066388_1000054222F065162AGGAGGMTPDDDAFKRALSEYREQTWDSTDFADLPTDVQSDIVARACRIQVADERLKELLAA*
Ga0066388_1000054224F048187GGGGGMRSHLCFALALTTSLLLLACSGSMNRSPSSVANGVPLSLTIGDTPPNGVAVLFFEANVTAANLQPSDTSKPAVSVLSTPVEVEFGHLQTDTAFLSLANVTPDTYKSITLTFGNAMMTIVNHSGAAIGMCAKNAVCELTPNFDPPTATLSSAPFPITIAQKSVVGIRLDFNVDSSVQNDLSVSPTVTIKKLTQRSDSDDEQEMEQVDELDGQVTAVGSNQFTLTDKRSGQSFTVNVDSNTAFEDFDRSGCSSNPENISCLQSGQVLDVDLSMDGMGTMLAKTVEFEEKAQQVAIKGTITSVDSDTQFHMVVFNEEPTTSGIAEGSQIVVTIQPNATFQIGREDMGEDGFSNSNLSFASGADLLVGQDVQVRPGTVSSSGTTSAVNTDLVRLWPSQITGQVGKINSDNGTFTVTGLSPLFAGATPPITTINVMTLSEMDFMDFSGLGSLATGNPVSIRGLLFNTTGTPTLVTRAMRRDEGEGD*
Ga0066388_1000054226F096138GGGGGMSVWENSNYCWVVICKNTKAHRETNVMFGHRIPLAETDSFEHVPVSGPFYVQCDECNQEHSYEPEEVMRVEMEIPESLTTHPRFL*
Ga0066388_1000054229F000262GAGGMSSQFERVAQVCVASVTIFLVLAIVSCSGQDFAVLQPTPKDLCKCLPIEPDIADYRHLAKHVPIPNIAEQDVSVEIILTWPQDPVIPPDAPRTGRENGVFHIANAYLQSANVNAADCDVSMEISNIQDKSAPRMIVETPVDSEYCAARQNLQAQLKQRGFILDSQHGGELPQALPVDVLGMAFEDFEHNRGHVATLWELHPAILTLH*

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