NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070658_10851333

Scaffold Ga0070658_10851333


Overview

Basic Information
Taxon OID3300005327 Open in IMG/M
Scaffold IDGa0070658_10851333 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014592Metagenome / Metatranscriptome261Y
F099086Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0070658_108513331F099086N/ALCCNLKLYDLFAICNSNVAVSCPTSDPAEASSGPQPKGDDEIKKMAEDILDKVVNRLLNEAAEVVLRED*
Ga0070658_108513332F014592N/AIEWIDHEAEAFEEILNSRGDICAFSGARGIATILEKNGCEHVKILAQSEAALSFEDARDPSAEASIIGGKFFTDIWENGGREMAGEIIRKSEKGIHDAREVAEAAEKSVEAESQLGIN*

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