Scaffold Ga0070658_10007460

Overview

Basic Information

• Taxon OID: 3300005327
• Scaffold ID: Ga0070658_10007460
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8827
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041273	Metagenome / Metatranscriptome	160	Y
F076566	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070658_100074601	F076566	N/A	MNAISSAIQQLEDVMRTMVEENAALRKQLQGIVDQAGHFFNGQPARARRLDGVPAKRGRAFKFTDEQATGFRKQVEGGKSAASLAKELKVSLPTMYNTLKRAGWKGRGRGRGRPARARARDGMPRKRGRAFKFTDDQAGDFRKQVEGGKSAASIAKEHKVSLPTMYNTLKRAGWKGRK*
Ga0070658_100074606	F041273	AGGAGG	MGWAARAGWAVLGLGVAGCGGASGGSVRAVRPASVTLAASCTADGVRIEVEQGVLGGFTGESPCSYSGRFVGVWRAVYEERWGTVPLEAWTVRIRAGERVDALGHGGLTWYDERLIELSQLHFELLPHELHHAAQGEASSDHHGWCADFVPWELERHIQDERAQLGCGL*