Scaffold Ga0074195

Basic Information
Taxon OID	3300005326 Open in IMG/M
Scaffold ID	Ga0074195_1013082 Open in IMG/M
Source Dataset Name	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4318
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.9918	Long. (^o)	-106.0796	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y
F089758	Metagenome	108	N
F094797	Metagenome	105	N

Family

Category

Number of Sequences

3D Structure?

Metagenome

132

Metagenome

121

Metagenome

108

Metagenome

105

Protein ID	Family	RBS	Sequence
Ga0074195_101308210	F071903	AGGAG	MNRTEQATAKREAELQEALSHLEYFKRTALALDQAMKVMEKDLKVCKKNEQIWEKRIEKMQEKA*
Ga0074195_10130823	F089758	GAGG	MVTIQEQPGYPGDFGKPFESEACLRRARKLCKKGNLLKDSDDKVYGTPPGLVSIVDLSHEMHRACSRLAKVLEDAGWFQVLELPGYYFPPESKEGLE*
Ga0074195_10130824	F094797	GAGG	VDLDDPGDPDPETFLPTPSEARALSRDKGFETIWKGGILTGCHLVLKLQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTLNGEELKLDACPCGGELVKDSCECLYCRDCGTVYDHHR*
Ga0074195_10130828	F060548	AGGAG	MSAVTNRPRQRKITDFVDMQVFTLIKQHAGEGLCIEDLAAVALKEMPSFDWTDDKIRHSVNRLEKRGRLASKYVIRSKRLCRVPYLI*

Protein ID

Family

RBS

Sequence

Ga0074195_101308210

AGGAG

MNRTEQATAKREAELQEALSHLEYFKRTALALDQAMKVMEKDLKVCKKNEQIWEKRIEKMQEKA*

Ga0074195_10130823

GAGG

MVTIQEQPGYPGDFGKPFESEACLRRARKLCKKGNLLKDSDDKVYGTPPGLVSIVDLSHEMHRACSRLAKVLEDAGWFQVLELPGYYFPPESKEGLE*

Ga0074195_10130824

GAGG

VDLDDPGDPDPETFLPTPSEARALSRDKGFETIWKGGILTGCHLVLKLQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTLNGEELKLDACPCGGELVKDSCECLYCRDCGTVYDHHR*

Ga0074195_10130828

AGGAG

MSAVTNRPRQRKITDFVDMQVFTLIKQHAGEGLCIEDLAAVALKEMPSFDWTDDKIRHSVNRLEKRGRLASKYVIRSKRLCRVPYLI*

NMPFamsDB