Scaffold Ga0074199_1001687

Overview

Basic Information

• Taxon OID: 3300005325
• Scaffold ID: Ga0074199_1001687
• Source Dataset Name: Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17421
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location

• Location Name: Espanola, New Mexico, United States
• Coordinates
  • Lat. (^o): 35.992
  • Long. (^o): -106.0797

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y
F089758	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074199_100168728	F071903	AGGAGG	MNRIEQAAARREAELQEALGHLEYFKRTAQALDQARRAIEKDLQVCRKNEQIWEKRIEKMQEKI*
Ga0074199_100168732	F060548	AGGAG	MSSVINRPKQRRVTDFVDMQVATLIKHHASEELCIEDLVAVALKEMPSFDWTDDKIRHSVNRLEKRGKMASKYVVRRKRLCRVPYLI*
Ga0074199_100168736	F089758	GAGG	MAIVPAQPGYPGDFGKPFESEVCLRKARKLCKKGNLLKDSEGKASGTPPGLVSIVDLSHEMHRACSTLAKVLEDAGWFQVLELPGYYFPPESKEGLE*