Scaffold Ga0074198

Basic Information
Taxon OID	3300005323 Open in IMG/M
Scaffold ID	Ga0074198_1000882 Open in IMG/M
Source Dataset Name	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005323 Open in IMG/M

Scaffold ID

Ga0074198_1000882 Open in IMG/M

Source Dataset Name

Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24873
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (89.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

24873

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (89.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Ecosystem

Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.992	Long. (^o)	-106.0797	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Espanola, New Mexico, United States

Coordinates

Lat. (^o)

35.992

Long. (^o)

-106.0797

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038519	Metagenome	165	Y
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y
F089758	Metagenome	108	N
F094797	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074198_100088221	F089758	GAGG	MAIVPAQPGYPGDFGKPFESEACLRKARKLCKKGNLLKDSEGKASGTPPGLVSIVDLSHEMHRACSTLAKVLEDAGWFQVLELPGYYFPPESKEGLE*
Ga0074198_100088222	F094797	GGAGG	VSSSEDLEDIMDPGGLPDPETFLPTPSEARALSRDKGFETIWKGGILTGCHLVLKLQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTLNGEELKLDACPCGGELVKDSCECLYCRDCGEVYSHY*
Ga0074198_100088225	F060548	AGGAG	MTSITNRPRQRRVTDFVDKQVATLIKDHAGEELCIEDLVDAAKREMPNFEWTNDKIRHSVTRLEKKRLVASEHVIRSKKLCRIPHLI*
Ga0074198_100088227	F071903	AGGAGG	MNRTEQAAAKRQDELQEALGHLEYFKRTALALDQAMKVMAKDLQVCKKNEQIWEKRIAKLEGSL*
Ga0074198_100088229	F038519	GAGG	MKMYGIATDLGDDWAGPYVDQELLKKTLEIIQKVDPNAEIASKETDPFSEQVLAGLLPFRIHVDLVDGIPQLPAEVSITWPPSSIEGIQVGNLEFREYFVWAESEKAALRKLATLNKATQSYSPKAAAAEEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074198_1000882

Overview

Ecosystem & Geography

Associated Families

Sequences