Scaffold Ga0065707_10012522

Overview

Basic Information

• Taxon OID: 3300005295
• Scaffold ID: Ga0065707_10012522
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2442
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092272	Metagenome	107	N
F101407	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065707_100125221	F092272	N/A	GAAAQPTEEAAPELSRAADADDPRAGWRHEFSPAWHMATFWSKEQGSHYTFHSLSIGYLMSVNAAGPFLHLSWVIPLQARQDGRVHSVSSLYQNGGGIDLLLGWQWRKTVTPEIEFEGGPGLHLNVLNLGGKPGLTNFNALQLGPGGMTVLRWRPGWRPHKVGWTVGAVGALGIDLYDPLRSNDLRIGVALRMGVLLGVDLP*
Ga0065707_100125222	F101407	GGTGG	VRRPALGVAALLGVALLACLGPYPNVGEKLDEVDLVNGTSYIALDAGAARILILAPFDGGPTAXFTRIDEQQPRAVQTLQGTYSGDATNTLAVTFSSTTLFSLPNEASKPVSDRIGAKRTELAPPMESNIRIDTRTEEVLDLSGSRDIAGHYLTLLGRTAVITGTEATVTACAFHMANLVVESSEARIPGFNSAGMTEYLNRVEPFQGILSGTVSVGLVGLFSPVVTTTYSNYADFEGVVLDGVQVSSTNASGDGALSGVLGFRIQRKGLPDLEGQVDYRAVTLTGGNESGDYLVRLDGGTEVAVPTGRRVPGLEECLGL*