Scaffold Ga0065705_10174079

Overview

Basic Information

• Taxon OID: 3300005294
• Scaffold ID: Ga0065705_10174079
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1632
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010721	Metagenome / Metatranscriptome	300	Y
F018748	Metagenome	233	Y
F052028	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_101740793	F052028	GGA	LIWTGGARLDVSLSNDSPVSVTIFVAILLIAAVPAYAQAQSRSSPKVTKRDAQKVATIIRSDEAKTQTYCEINKISDQMNHAYGKNDKETVDELSEKIDRLEKILGSEYIALMDGLQKLGPENKKRVAEIMLQFAALDRLCRR*
Ga0065705_101740794	F010721	GGA	MIRVFVETPKGRDSAGFTVPESAAADDVLMALRGQGWSPFALRLDLEQQAWIALDLDWRRAA*
Ga0065705_101740795	F018748	AGGAG	MDKRDQELLAKQLWSVSSPPQNNAIIGLTIIAVFLLGIGIGDILSKSKQANTNYAGMIFRAESPP*