Scaffold Ga0065705_10142622

Overview

Basic Information

• Taxon OID: 3300005294
• Scaffold ID: Ga0065705_10142622
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2107
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F018957	Metagenome	232	Y
F060443	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_101426222	F060443	N/A	MPWPAKCYECGQEVPITRPLYGKQSLLADGDLGHAISTYEAHPRRPTDTRACSAVSTTVPQYQMRKAHSTTPGEDPPQITPRSIPPRRTRKK*
Ga0065705_101426224	F018957	GAG	MMIKWLVMMALLAGCATQQATQPDCKVKWTGQPPVQVDSCTGRSEDLTADWHWYDYVFSIPLGMVGFYDPGRAN*
Ga0065705_101426225	F000517	AGGAG	MKWHLALLIAASFAAPPLDGLAGEKQVAHVKELAGSWRGWVRTEFGRERATMVVEEDGTYKASTTRGTLTQGAFDLRDGKLRYQSTRTTGTAGLYEDHGKTVLTMMPVDPTADTGRTEYERVK*