Scaffold Ga0065705_10106549

Overview

Basic Information

• Taxon OID: 3300005294
• Scaffold ID: Ga0065705_10106549
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6498
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002587	Metagenome / Metatranscriptome	546	Y
F015782	Metagenome	252	Y
F022290	Metagenome	215	N
F025352	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_1010654910	F025352	GAG	MSSALDEFKKPIEEWARALVDGKPMENLLILYKLLYALGCRIDGIDFEIDRLCVAAIKKAKTLS*
Ga0065705_101065494	F002587	GGA	MSGPFLPVAEWRFTKMSEWIEVPAHRIYVISERELRDDFDYIGENGRRAPRDEIPYRFVRKKDGKVFKWARFAPQYTGVHVCTALEEI*
Ga0065705_101065495	F015782	GAG	MKQYKDHPIYGVAVPAPESLWYSRGLVFDRDLNQTIEIKRIESNPRTFKTKKQAEKYGLELCKEWIEKQP*
Ga0065705_101065498	F022290	GAG	MNRVDLKRLKEKEDAAIKIIDSWPRIFQLLVYRQLYAFGIRISNIDFEIEKELKKST*