Scaffold Ga0065705_10104806

Overview

Basic Information

• Taxon OID: 3300005294
• Scaffold ID: Ga0065705_10104806
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10988
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036586	Metagenome	169	Y
F079697	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_101048066	F079697	N/A	MAAERALDLQGVEVDRRSARKDGREVVALRCVDTGMNGFVVDCDVYPVDAVRVDPLRPGPYRFATRAQADAFMDEAAKALTYLGCEL*
Ga0065705_101048067	F036586	GAG	MASQLRLQVVIPLVFLGLLGAAFGVYTMGKAPSGGSGDPGVPLITTHPDKSKPKPPATSEEWVKSLEAWCGYLQAQYEKIEEPVTLADYESVLGEYVELWDSAQPAFIKLGLPSQKPATAIALRKNIDTSASELRWVFNRIQALDVAAIENRLDDLNALDSERVALTRQLGAGKCLDEENKGVARLAIQQAPLLINSQLRRYGKVVVLFYEPGANYDAIQTREARAGALLAHAGFVSVNVSKNREVGQLASQYNVLQSPTVLIFTRGHNLKARIDGFYDRTAIVQAVKNA*