Scaffold Ga0065705_10014804

Overview

Basic Information

• Taxon OID: 3300005294
• Scaffold ID: Ga0065705_10014804
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2206
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068279	Metagenome	125	Y
F083401	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_100148043	F068279	GGA	MGTFLTDKCQEIRNWLAIGSDVYPDPVITSWIRMAEEYLSTALRVKHMVQIDTCELVDSRVQLPVDWQEIRMVRRMDNGGVIRYQTPDEFLNPEYPEYPAAPYPGQKSRYCIMGNYILVGGVCFPPSMKVELTYYQNIPPLTDEVNNWPNVFHQTVYTLKILHVASLYAIEDARGPVWDTEVTRMVNAMNAQHKIDMASGSVLVXTRRXSFG*
Ga0065705_100148044	F083401	GGAG	MAEKKLVYRDDGAVKRTMIWDDDAPELVHVKTELDMTQTIENNKVMRELHPARSTNKVLARGVPMTVAEQALREGWDDNDWKRWLNDPANAAFRVWPGRV*