Scaffold Ga0065705_10003678

Overview

Basic Information

• Taxon OID: 3300005294
• Scaffold ID: Ga0065705_10003678
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5782
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021017	Metagenome / Metatranscriptome	221	Y
F043277	Metagenome / Metatranscriptome	156	N
F051447	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_100036785	F043277	GAG	MRRFAVLLVAVAVAASMAGAARGTVAKTTGGVYLQLSEGAGFAKVRNRGTFIGRVKRGKIVATPNVNVNGCESRSDTNDNMTRCKGWQITFSTVGAGRWRLKLWGRGIYGSGFVHGCLVLDGRDTGQTGTFRRGLDGEEQPWPHSRTRFKLGSGGC*
Ga0065705_100036786	F021017	GAGG	MDENLRHDRTVRLLAARLDALAVASMRVPGGERMYRHHILAAVAATRHAIDLDLLSSAEADSIWAEVAKRHPDAGWCRSGPRLAA*
Ga0065705_100036787	F051447	AGGA	VTMCAVCRRNLLAGESFRYWQVRRHEGPGGRIVCLLCESEAAREGWQRSGSTLRHENATGLRGSVRRVA*