Scaffold Ga0065715_10297880

Overview

Basic Information

• Taxon OID: 3300005293
• Scaffold ID: Ga0065715_10297880
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004910	Metagenome / Metatranscriptome	419	Y
F016609	Metagenome / Metatranscriptome	246	Y
F053505	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065715_102978802	F004910	GGAG	MAISQRLVDPFREFKVSVRYSWQESYHAALLETDWTKMVELVQKAESDIHKRRLELTQDHNGTQEEREAVVNALNGLRVLRMDAATWRDRQNLE*
Ga0065715_102978803	F016609	GGAGG	MTEYKWHEVYKAALLETDWSKMEERINAAEAALHARKHEFDLNHGGTPEENQAIEDALRALGVLQTDLATWLGSKRAS*
Ga0065715_102978804	F053505	N/A	KHHDLVAGILEELEPLSPGSAMEIPLADVGGIGLANLRSAVHRAATSRGLQIETLADEKNFYVWKKK*