Scaffold Ga0065715_10000309

Overview

Basic Information

• Taxon OID: 3300005293
• Scaffold ID: Ga0065715_10000309
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15196
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037407	Metagenome / Metatranscriptome	168	Y
F089140	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065715_1000030912	F089140	N/A	MRLSLILTGILIIFMSIIVSSSQFNLNVNAITNVNNTYFSIIIPNNWTYAEHSKMGMSMGESHGNGSVNLVALAPADFAKALVVNENNDSPYGKMFNGGAYSTLRLDTDYPNKNSTLDDYAKYRINSIIPGINLTSQQNTIVGNEKAIRIDGNGLNKLKNLNYVAYLVLHDKVPYYLEYIANTKDFQKYLPQFEQMIKTFKFVK*
Ga0065715_100003095	F037407	N/A	MFLLAVFSFTSMTAFAQGGANLTAGANMSVVPVQKTAILHVVPEHESAQQIRDEIRSNHPLLAAIADKIQTMDERETLKYTLGVEIVSDLLKMHAEDLIRNQTAR*