Scaffold Ga0065715_10000287

Overview

Basic Information

• Taxon OID: 3300005293
• Scaffold ID: Ga0065715_10000287
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17508
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028218	Metagenome	192	N
F048407	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065715_1000028718	F028218	GAG	MGIRLSYPSYWDHPSELLGEQRCLESRGCTAFLSMSKNYSHSIPVLMINAFSESSDFLQLEKACNCHSLMEFVRQKYKSIQSSDFLRGFTFINDNQTTVGKKYPAWQFEYSRLNEDFPDERLTSLEVMTKVNGTFYDISYVPGTNQSYASQLPEVRKVIDSIEFVAPHKAVTKIPSFLITNDTEIINSQR*
Ga0065715_1000028720	F048407	AGG	MNQEEILKKTNDLGLTTTPEIINQISDMVSKIAVNTMLSAGEVEALTNIMILKACDTALLDRRTMITVNDVLSSLNFVCVPFFFPCAKSNILENPRITASVITPSDINLLENLGISKNDELDATPTSEIANKAVSYLKGKVPSMDISSHDFDLFNKRIEIWKLQANILSTLNK*