Scaffold Ga0065704_10168438

Overview

Basic Information

• Taxon OID: 3300005289
• Scaffold ID: Ga0065704_10168438
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F011969	Metagenome / Metatranscriptome	285	Y
F103346	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065704_101684381	F103346	AGAAG	MEVIQVFDRPASQAFYSVAGRLLFIESFDPELRNLIVDLFAGWQLTPVALPDRPPDIQIKFSCGEAPPGIPRNLDQFDIAEGGKCYTGGTELYLELGGTVVHLENASSVSVSFTELPR
Ga0065704_101684382	F001123	AGGAGG	LAKQNEIINEEIAGLHSGNGVSGECSEIKKVFVEPTISVPVDVLEATTFFQASTSGVTN*
Ga0065704_101684383	F011969	N/A	IKAEKAKMSEVAQELSKQLKVPVFLGPERQNELLTIEFNELTLEPALQLMSPTVYVDYEIDTGSGAPPKALGIYFFDANQGEPPLTAVVNGSTESMLIEGNTEDGVEPQTEDEKKKLEEQPLKVAFKDNLLTVKAKKQPLQLVLLKIGEEIGIPVDIQETNVAVIDAEFSKLPIEDLVRQLSPHIRLYLRADLTRAERRALRLVLAEPPKPTQ*