Basic Information | |
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Taxon OID | 3300005289 Open in IMG/M |
Scaffold ID | Ga0065704_10019849 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2075 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | East Lansing, MI | |||||||
Coordinates | Lat. (o) | 42.794771 | Long. (o) | -84.393804 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040713 | Metagenome / Metatranscriptome | 161 | Y |
F066550 | Metagenome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0065704_100198492 | F066550 | AGGAGG | MDXTRIYSVDSETFNELSHANDELIQYLQWLIERKDLEAINKLSPIVRRTTDLFLAILEGAFPEISHVIDAFNKLRDEITERIAQASTPEEIEQLSKQVDELTSDYQKRINEVVAETKRLEKQSRKQ* |
Ga0065704_100198496 | F040713 | N/A | MDEDYKGHHIQSVPRHLLPDSERWTALVVINWTSGPHEQFRRFDVQRGFATQGEAEQAGLTFAKKWIDDGKPKLRESGTGGS* |
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