Scaffold Ga0065704_10005786

Overview

Basic Information

• Taxon OID: 3300005289
• Scaffold ID: Ga0065704_10005786
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5047
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003994	Metagenome	458	Y
F032436	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065704_100057862	F003994	AGGAGG	MNQLQRERERTFLVQCIWCGAKIRDDKKEEAKGVCLKCFYQILSNHLRSQKRTAYGEFVSDR*
Ga0065704_100057864	F032436	GAG	MAISNELSSDVAVALLAKKKSPQELKKLKDIILEVHSALQKMSAEARTFRFRKKTQEVTKVTKARL*