Scaffold Ga0065714_10064553

Overview

Basic Information

• Taxon OID: 3300005288
• Scaffold ID: Ga0065714_10064553
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36784
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F015608	Metagenome	253	Y
F021790	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065714_1006455316	F001505	N/A	MNDIYLMQKTKNAANSPAQSEFDPVRWAQLNPWLSEGQADDRIPMNGSVKDSGGPPSVQRSFARRSHQAMFKTWSQARHD*
Ga0065714_1006455322	F021790	GAGG	MSSLIHDTQRLFGLLELDPGGTVIFSKMEGDERLPGAVDVVGRNFFSEVATFLNVAEFRQRFETFDSNPEPSSSFMFNCDYEDGAVPVKVLLARLREDTKYPESVLVYIKKADQCSKAINMH*
Ga0065714_1006455343	F015608	GAG	VEITNTLNAEKDQQPQLSLVEVQAAEGSFRQPTAAEVSILTFSKLRDARSHVPELSNEFARLLNRGSSLE*