Basic Information | |
---|---|
Taxon OID | 3300005288 Open in IMG/M |
Scaffold ID | Ga0065714_10064469 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 61986 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (63.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Kellogg Biological Station, Michigan State University | |||||||
Coordinates | Lat. (o) | 42.406189 | Long. (o) | -85.40016 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000719 | Metagenome | 923 | Y |
F004395 | Metagenome | 440 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0065714_1006446930 | F004395 | AGGAG | MRRYFLLFVIILAALGSLSVSAQEVEDTIKIKTRVVFLDALVKDKKTNLPISTLTQENFEVLDEGKPRNISYFTREGQARKPLALILILDLREDGAGRFMKQPEILKAMEDELAKLPAGDEVAIMAMNINEDEARVWLTEFTNDRAKLAAALARVPAMCQPKDESAVSSAAQKIQDTGAKPDDVLSTETVQGRNGSTVTRETRRDGGVNVKRMDKHGHVTIDLGDVYDMAAAVRDATRKAEELRPNSQTSIVWVSDGIAPIFFEDRDATEQILIRNNVIFNSLTVELRTLFKFLLPVAKPIGGWLGMSLYGSAKYLAQRSGGEAVKVGRVKDYGAGLSKIIGNLTARYSLGFALAENETDDGRMHALEVRVKAKDDKGKNRKLQVSSRQGYYMSTTVPKEAARAQ* |
Ga0065714_1006446931 | F000719 | AGGAGG | MKKIFCAIVLLTLAPAAVVPAKADDFNSVVKMIEQFYRVKHQGIPFLAKTGMKVATTAARIKGGEAKRIAEAGSIKLAVFEDQAFDGDFMKFRSSLNDALNETWIPLIQTLSAKNQEQTYIFLRSAAEKFNVLVITIADRDATVVQVTISPKNLAALMRDPEGTGKAITEEATIIDQE* |
⦗Top⦘ |