Scaffold Ga0065714_10064421

Overview

Basic Information

• Taxon OID: 3300005288
• Scaffold ID: Ga0065714_10064421
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 398277
• Total Scaffold Genes: 332
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 222 (66.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000621	Metagenome	981	Y
F019537	Metagenome / Metatranscriptome	229	Y
F043573	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065714_10064421310	F000621	GGAG	MPTTKHELLDWLMDVPEDAEIGTDGDGLALLAILGTNVHLLEVGHIPNADELYVEAINQAIMERLRRIDAAGGETETGVIIVTFQGYISGVPSLFSSDFNTAFVFKNKEQAEAFITEFVDELHNPQILDCP*
Ga0065714_1006442151	F043573	GGAG	MRGRPIRSQIYLPVVRFGVRDTDWKFVIFIALLGYSIPFMFNLRFMRFPLEIWICPISLVASVAFFNFVRIGRRPFWLQHHLAALIKTSRHRHALPTDKKERPWLLADHQH*
Ga0065714_1006442152	F019537	AGGAG	MRPDFRRWLHNQTNALRIDEQLLTNSHTARASRRLLQASVIVNALMPLLVIGIVFSLTTVSVMAQGPSGGSIFGGNDQTLGNGVREIIKWGRNLLFLLGIGGLMWAAVNYMTEKNWTKQALGGVFCFAFGAVASLAYSFSQGNAVNLDTDLGN*