NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065718_1036402

Scaffold Ga0065718_1036402


Overview

Basic Information
Taxon OID3300005278 Open in IMG/M
Scaffold IDGa0065718_1036402 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1196
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location
Location NameGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.71458Long. (o)-119.369659Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027047Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0065718_10364021F027047AGGTGGMDWSSLGIAVLSAVIYSLSMYVKKHLNPDNPQAFDKVKFITTLIWGIIIGVVLQLSGVEITERTVEEQFVAYAGLIAITENIIKAVIRAVKR*

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