Scaffold Ga0065719_110611

Overview

Basic Information

• Taxon OID: 3300005275
• Scaffold ID: Ga0065719_110611
• Source Dataset Name: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 947
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location

• Location Name: Great Boiling Spring, Nevada
• Coordinates
  • Lat. (^o): 40.67
  • Long. (^o): -119.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089858	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065719_1106112	F089858	AGGTGG	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSVPELEEEGLMEIMVSDVGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQVAHEDLEEETIKARGVKYVIIGDIQDMGRARFMRVRRGVREIEEEGE*