Scaffold Ga0065703_1019252

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065703_1019252

Scaffold Ga0065703_1019252

Overview

Basic Information
Taxon OID	3300005272 Open in IMG/M
Scaffold ID	Ga0065703_1019252 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3363
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	Central Sands area of central Wisconsin
Coordinates	Lat. (^o)	44.168815	Long. (^o)	-89.633871	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003709	Metagenome	473	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065703_10192523	F003709	N/A	MPDAVPAARRSRASVVWMIIGGLSAVAPLFGPLGTTFQYLADFFAERPQSVQGPGVGFFVELLALIVCPVGLLVFTIALVVFIRSRK*

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