Scaffold Ga0065706_1000015

Overview

Basic Information

• Taxon OID: 3300005269
• Scaffold ID: Ga0065706_1000015
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13732
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005305	Metagenome / Metatranscriptome	405	N
F012397	Metagenome	281	Y
F023903	Metagenome / Metatranscriptome	208	N
F100610	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065706_100001510	F005305	AGG	VEDLDKELGPLIENFQNLVKDAKVKKLHSLREDEDSKKEFSKLSQHVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0065706_100001516	F012397	N/A	VRWNRILILIVLVTTFSLLSGPGFAFGEIKNEINVTPPLNWEPSPTNNSTTMIWFQNSTKSIFAIIKAPDDLVFPLFIAGXFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSQLLDSSSGLIPKNEFLSKIPEGYDVPFRGMLILTQKHNELYAIIFLNPKEKFDSMLNQIQPTLDSIQLTG*
Ga0065706_100001519	F100610	N/A	MDIIEFGLTNKSDFYRCSYGECFRFIADKYIHRCPNPIPDTKRITALSIILXXPXDFKKPVXDLGI*
Ga0065706_10000152	F023903	N/A	MVDLMINHEGKKCDNCGDAVDRLVPLNDPTRIGXWWCLKCIYKEGKAKFDADSKNG*