NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065698_100926

Scaffold Ga0065698_100926


Overview

Basic Information
Taxon OID3300005268 Open in IMG/M
Scaffold IDGa0065698_100926 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3122
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100063Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0065698_1009262F100063GAGMSETCEVCGQFTGRTASFDLWIRGLDRRGEGXRIEIDVSGVSVGECCGLGLLQRPARRVDWSYQRYLNGTSDGELRYVVMIRDEIETDSDTTQFRHPITGNYLPESVDGYVFGEID*

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