Scaffold Ga0065702_100698

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065702_100698

Scaffold Ga0065702_100698

Overview

Basic Information
Taxon OID	3300005266 Open in IMG/M
Scaffold ID	Ga0065702_100698 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Rose Lake, Michigan, USA - BV2.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	645
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	Central Sands area of central Wisconsin.
Coordinates	Lat. (^o)	44.166906	Long. (^o)	-89.649965	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000283	Metagenome / Metatranscriptome	1379	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065702_1006982	F000283	AGGA	MNSTLVSRNVFLCAAAILIASCGTATFTKTGSDATIESLRSFHLAFIDQFAVPGKKFNATAFNAKVNEGNAKFQQAIADEKFTARRPVLVDLKAQFDADAAHLKSKASHGKVTPALASEMKKDVNKIYDHALGR*

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